Package: rshift 3.1.2

Alex H. Room
rshift: Paleoecology Functions for Regime Shift Analysis
Contains a variety of functions, based around regime shift analysis of paleoecological data. Citations: Rodionov() from Rodionov (2004) <doi:10.1029/2004GL019448> Lanzante() from Lanzante (1996) <doi:10.1002/(SICI)1097-0088(199611)16:11%3C1197::AID-JOC89%3E3.0.CO;2-L> Hellinger_trans from Numerical Ecology, Legendre & Legendre (ISBN 9780444538680) rolling_autoc from Liu, Gao & Wang (2018) <doi:10.1016/j.scitotenv.2018.06.276> Sample data sets lake_data & lake_RSI processed from Bush, Silman & Urrego (2004) <doi:10.1126/science.1090795> Sample data set January_PDO from NOAA: <https://www.ncei.noaa.gov/access/monitoring/pdo/>.
Authors:
rshift_3.1.2.tar.gz
rshift_3.1.2.zip(r-4.7)rshift_3.1.2.zip(r-4.6)rshift_3.1.2.zip(r-4.5)
rshift_3.1.2.tgz(r-4.6-x86_64)rshift_3.1.2.tgz(r-4.6-arm64)rshift_3.1.2.tgz(r-4.5-x86_64)rshift_3.1.2.tgz(r-4.5-arm64)
rshift_3.1.2.tar.gz(r-4.7-arm64)rshift_3.1.2.tar.gz(r-4.7-x86_64)rshift_3.1.2.tar.gz(r-4.6-arm64)rshift_3.1.2.tar.gz(r-4.6-x86_64)
rshift_3.1.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
rshift/json (API)
| # Install 'rshift' in R: |
| install.packages('rshift', repos = c('https://alexhroom.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/alexhroom/rshift/issues
- January_PDO - Pacific Decadal Oscillation in January
- lake_data - DCA-ordinated pollen data from Lake Consuelo
- lake_RSI - DCA-ordinated pollen data from Lake Consuelo with RSI values
ecologypaleoecologyregime-shiftrustcargo
Last updated from:2b88cf8008. Checks:11 WARNING, 1 ERROR, 1 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | WARNING | 183 | ||
| linux-devel-x86_64 | WARNING | 155 | ||
| source / vignettes | ERROR | 179 | ||
| linux-release-arm64 | WARNING | 195 | ||
| linux-release-x86_64 | WARNING | 162 | ||
| macos-release-arm64 | WARNING | 228 | ||
| macos-release-x86_64 | WARNING | 286 | ||
| macos-oldrel-arm64 | WARNING | 182 | ||
| macos-oldrel-x86_64 | WARNING | 259 | ||
| windows-devel | WARNING | 138 | ||
| windows-release | WARNING | 140 | ||
| windows-oldrel | WARNING | 291 | ||
| wasm-release | OK | 120 |
Exports:absolute_to_percentageHellinger_transLanzanteregime_meansRodionovrolling_autocRSI_graph
Dependencies:clicpp11dplyrfarvergenericsggplot2gluegtableisobandlabelinglifecyclemagrittrpillarpkgconfigR6RColorBrewerrlangS7scalestibbletidyselectutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Converts absolute abundance data to a percentage of total abundance for each site | absolute_to_percentage |
| Hellinger transform | Hellinger_trans |
| Pacific Decadal Oscillation in January | January_PDO |
| DCA-ordinated pollen data from Lake Consuelo | lake_data |
| DCA-ordinated pollen data from Lake Consuelo with RSI values | lake_RSI |
| Lanzante L-test | Lanzante |
| Calculate means for each regime | regime_means |
| Rodionov (2004)'s STARS algorithm | Rodionov |
| Rolling autocorrelation | rolling_autoc |
| Regime Shift Index graph | RSI_graph |
| Calculates the mean for each regime in a regime shift analysis. | rust_regime_means |
| Calculate STARS RSI points and return to R as a vector | rust_rodionov |